Quantification of resilience in farm animals

This is a supporting website for the paper:

Animal Board Invited Review: Quantification of resilience in farm animals. Masoomeh Taghipoor, Matti Pastell, Olivier Martin, Hieu Nguyen Ba, Jaap van Milgen, Andrea Doesch Wilson, Christelle Loncke, Laurence Puillet, Nicolas C Friggens, & Rafael Muñoz-Tamayo. Animal (2023), https://doi.org/10.1016/j.animal.2023.100925

It hosts the following code examples to supplement the paper:

• Dynamic semi-mechanistic model

• Differential smoothing model

• Using switching dynamic linear models for detecting perturbations

• Example of an state observer to estimate the perturbed component of the body weight trajectory